6S3D
Structure of D25 Fab in complex with scaffold S0_2.126
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-27 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.9677 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 126.272, 126.977, 156.091 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.086 - 3.000 |
R-factor | 0.2702 |
Rwork | 0.269 |
R-free | 0.29170 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4jha |
RMSD bond length | 0.004 |
RMSD bond angle | 0.793 |
Data reduction software | XDS (BUILT=20190315) |
Data scaling software | XSCALE (BUILT=20190315) |
Phasing software | PHASER (2.8.1) |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 49.086 | 49.086 | 3.080 |
High resolution limit [Å] | 3.000 | 13.410 | 3.000 |
Rmerge | 0.156 | ||
Rmeas | 0.168 | ||
Number of reflections | 96992 | 1048 | 7183 |
<I/σ(I)> | 8.69 | 28.98 | 1.38 |
Completeness [%] | 99.7 | 96.7 | 99.3 |
Redundancy | 7.238 | ||
CC(1/2) | 0.998 | 0.810 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 291.15 | 10% (w/v) PEG 8000, 100 mM HEPES pH 7.5, 200 mM Calcium acetate |