6RZE
Crystal structure of E. coli Adenylate kinase R119A mutant
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-10-11 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.873 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 134.314, 31.503, 53.189 |
Unit cell angles | 90.00, 110.93, 90.00 |
Refinement procedure
Resolution | 48.221 - 1.690 |
R-factor | 0.1865 |
Rwork | 0.182 |
R-free | 0.23500 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4x8h |
RMSD bond length | 0.006 |
RMSD bond angle | 0.863 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10.1_2155: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 48.221 | 1.750 |
High resolution limit [Å] | 1.690 | 1.700 |
Rmerge | 0.122 | 0.824 |
Rpim | 0.090 | 0.568 |
Number of reflections | 22857 | 2087 |
<I/σ(I)> | 7.2 | 1.7 |
Completeness [%] | 99.9 | |
Redundancy | 4.7 | |
CC(1/2) | 0.994 | 0.598 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8.5 | 291 | PURIFIED ADK IN 50 MM NACL AND 30 MM MES BUFFER, PH 6.0 WAS CONCENTRATED TO 18 MG/ML AND CO- CRYSTALLIZED WITH A 5 MOLAR EXCESS OF AP5A. A TYPICAL DROP CONTAINED 2 MICROL OF PROTEIN MIXED WITH 2 MICROL OF PRECIPITANT AND EQUILIBRATED AGAINST 1 ML RESERVOIR SOLUTION CONTAINING 28-30% PEG 4K, 0.2 M MgCL2 AND 0.1 M Tris-HCl, PH 8.5). |