6RYA
Structure of Dup1 mutant H67A:Ubiquitin complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SLS BEAMLINE X06SA |
Synchrotron site | SLS |
Beamline | X06SA |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-06 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.0 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 116.328, 67.136, 182.753 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 49.070 - 2.210 |
R-factor | 0.21265 |
Rwork | 0.209 |
R-free | 0.28877 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6b7p |
RMSD bond length | 0.009 |
RMSD bond angle | 1.682 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 49.070 | 2.289 |
High resolution limit [Å] | 2.210 | 2.210 |
Rmerge | 0.081 | 0.452 |
Rmeas | 0.101 | 0.573 |
Rpim | 0.060 | 0.347 |
Number of reflections | 68825 | 7031 |
<I/σ(I)> | 7.28 | |
Completeness [%] | 99.8 | |
Redundancy | 2.6 | |
CC(1/2) | 0.995 | 0.672 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 8 | 293 | 20 - 22.5 % PEG 3350/ PEG4000, 100 mM Tris-HCl pH 8.0, 100 mM Magnesium chloride |