6RRJ
GOLGI ALPHA-MANNOSIDASE II in complex with 5-(Adamantan-1yl-methoxy)-pentyl 2,5-dideoxy-2,5-imino-D-talo-hexonamide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-24 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.976 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 89.354, 91.517, 132.748 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 75.460 - 1.950 |
R-factor | 0.2027 |
Rwork | 0.200 |
R-free | 0.25350 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3bub |
RMSD bond length | 0.008 |
RMSD bond angle | 1.524 |
Data reduction software | xia2 |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 91.520 | 1.990 |
High resolution limit [Å] | 1.950 | 1.950 |
Number of reflections | 80011 | 34362 |
<I/σ(I)> | 9.5 | 1.2 |
Completeness [%] | 100.0 | |
Redundancy | 7.9 | |
CC(1/2) | 0.997 | 0.812 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 0.1 M Sodium Succinate, pH 7.0 10 % PEG 3350 with microseeding |