6RGC
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complexe with an inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-1 |
Synchrotron site | ESRF |
Beamline | ID14-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-07-11 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 0.933400 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 63.198, 74.809, 118.699 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 63.289 - 2.190 |
R-factor | 0.1948 |
Rwork | 0.193 |
R-free | 0.22650 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.7.2) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 63.290 | 63.290 | 2.260 |
High resolution limit [Å] | 2.190 | 9.030 | 2.190 |
Rmerge | 0.075 | 0.029 | 0.530 |
Rmeas | 0.089 | 0.036 | 0.646 |
Rpim | 0.047 | 0.021 | 0.362 |
Total number of observations | 49611 | 683 | 3240 |
Number of reflections | 14784 | 243 | 1255 |
<I/σ(I)> | 12.1 | 37.4 | 1.7 |
Completeness [%] | 99.7 | 97.6 | 98 |
Redundancy | 3.4 | 2.8 | 2.6 |
CC(1/2) | 0.997 | 0.995 | 0.699 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 5 | 291.15 | 30 mM NaBr, 220 mM Kcitrate, glycerol 6%, 15-16% w/v PEG400 |