6RG8
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complexe with an inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID23-2 |
Synchrotron site | ESRF |
Beamline | ID23-2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2012-09-16 |
Detector | MARRESEARCH |
Wavelength(s) | 0.872600 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 63.047, 76.672, 119.162 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 55.728 - 2.470 |
R-factor | 0.2031 |
Rwork | 0.201 |
R-free | 0.24190 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.7.1) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 59.580 | 59.580 | 2.570 |
High resolution limit [Å] | 2.470 | 8.910 | 2.470 |
Rmerge | 0.127 | 0.032 | 1.156 |
Rmeas | 0.137 | 0.036 | 1.255 |
Rpim | 0.052 | 0.015 | 0.482 |
Total number of observations | 72027 | 1419 | 7658 |
Number of reflections | 10684 | 258 | 1173 |
<I/σ(I)> | 12.8 | 36.7 | 2 |
Completeness [%] | 99.8 | 97.5 | 98.8 |
Redundancy | 6.7 | 5.5 | 6.5 |
CC(1/2) | 0.997 | 0.999 | 0.730 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 5 | 291.15 | 30 mM NaBr, 220 mM Kcitrate, glycerol 6%, 15-16% w/v PEG400 |