6RG6
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complexe with an inhibitor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID14-1 |
Synchrotron site | ESRF |
Beamline | ID14-1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2010-09-16 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 0.933400 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 62.910, 75.235, 118.600 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 37.618 - 2.520 |
R-factor | 0.2354 |
Rwork | 0.233 |
R-free | 0.29020 |
Structure solution method | MOLECULAR REPLACEMENT |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.7.1) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 37.620 | 37.620 | 2.620 |
High resolution limit [Å] | 2.520 | 9.090 | 2.520 |
Rmerge | 0.212 | 0.088 | 1.148 |
Rmeas | 0.225 | 0.094 | 1.225 |
Rpim | 0.074 | 0.032 | 0.415 |
Total number of observations | 80314 | 1788 | 8772 |
Number of reflections | 9254 | 226 | 1086 |
<I/σ(I)> | 8 | 20.5 | 2.1 |
Completeness [%] | 94.4 | 94.8 | 99.7 |
Redundancy | 8.7 | 7.9 | 8.1 |
CC(1/2) | 0.985 | 0.995 | 0.656 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 5 | 291.15 | 30 mM NaBr, 220 mM Kcitrate, glycerol 6%, 15-16% w/v PEG400 |