6RBP
Crystal structure of NAD kinase 1 from Listeria monocytogenes in complexe with an adenine derivative
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE ID29 |
Synchrotron site | ESRF |
Beamline | ID29 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2008-09-02 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.97921 |
Spacegroup name | I 2 2 2 |
Unit cell lengths | 62.970, 74.670, 118.880 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 55.650 - 2.473 |
R-factor | 0.2143 |
Rwork | 0.212 |
R-free | 0.23660 |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.1) |
Phasing software | PHASER |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 55.650 | 55.650 | 2.570 |
High resolution limit [Å] | 2.470 | 8.910 | 2.470 |
Rmerge | 0.103 | 0.033 | 0.932 |
Rmeas | 0.120 | 0.040 | 1.081 |
Rpim | 0.061 | 0.022 | 0.541 |
Total number of observations | 38984 | 832 | 4519 |
Number of reflections | 10375 | 254 | 1168 |
<I/σ(I)> | 9.6 | 33.3 | 1.5 |
Completeness [%] | 99.8 | 98.2 | 99.9 |
Redundancy | 3.8 | 3.3 | 3.9 |
CC(1/2) | 0.995 | 0.990 | 0.826 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 5 | 291.15 | 30 mM NaBr, 220 mM Kcitrate, glycerol 6%, 15-16% w/v PEG400 |