6R8M
Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikE with an engineered HMA domain of Pikp-1 from rice (Oryza sativa)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2016-12-14 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.9763 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 66.456, 80.701, 105.577 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.500 - 1.850 |
R-factor | 0.1886 |
Rwork | 0.186 |
R-free | 0.23010 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6g10 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.558 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER (2.6.1) |
Refinement software | REFMAC (5.8.0232) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 29.500 | 1.890 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.052 | 0.751 |
Rmeas | 0.054 | 0.773 |
Rpim | 0.017 | 0.181 |
Number of reflections | 49337 | 2963 |
<I/σ(I)> | 31 | |
Completeness [%] | 99.8 | 97.8 |
Redundancy | 18.3 | 17.8 |
CC(1/2) | 1.000 | 0.952 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | Morpheus HT-96 condition A8 [0.06M Divalents (0.3M Magnesium chloride hexahydrate; 0.3M Calcium chloride dihydrate); 0.1M Buffer system 2 (Sodium HEPES; MOPS (acid)) pH 7.5; 37.5%v/v Precipitant mix 4 (25%v/v MPD; 25%v/v PEG 1000; 25%v/v PEG3350) |