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6R8M

Complex of rice blast (Magnaporthe oryzae) effector protein AVR-PikE with an engineered HMA domain of Pikp-1 from rice (Oryza sativa)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsDIAMOND BEAMLINE I03
Synchrotron siteDiamond
BeamlineI03
Temperature [K]100
Detector technologyPIXEL
Collection date2016-12-14
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9763
Spacegroup nameP 21 21 21
Unit cell lengths66.456, 80.701, 105.577
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution29.500 - 1.850
R-factor0.1886
Rwork0.186
R-free0.23010
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6g10
RMSD bond length0.010
RMSD bond angle1.558
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER (2.6.1)
Refinement softwareREFMAC (5.8.0232)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]29.5001.890
High resolution limit [Å]1.8501.850
Rmerge0.0520.751
Rmeas0.0540.773
Rpim0.0170.181
Number of reflections493372963
<I/σ(I)>31
Completeness [%]99.897.8
Redundancy18.317.8
CC(1/2)1.0000.952
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP293Morpheus HT-96 condition A8 [0.06M Divalents (0.3M Magnesium chloride hexahydrate; 0.3M Calcium chloride dihydrate); 0.1M Buffer system 2 (Sodium HEPES; MOPS (acid)) pH 7.5; 37.5%v/v Precipitant mix 4 (25%v/v MPD; 25%v/v PEG 1000; 25%v/v PEG3350)

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PDB entries from 2024-05-15

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