6R0F
Getah virus macro domain in complex with ADPr, pose 1
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ESRF BEAMLINE MASSIF-3 |
Synchrotron site | ESRF |
Beamline | MASSIF-3 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-01-31 |
Detector | DECTRIS EIGER X 4M |
Wavelength(s) | 0.967700 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 46.729, 71.566, 98.693 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 40.660 - 2.050 |
R-factor | 0.19514 |
Rwork | 0.193 |
R-free | 0.23548 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 6qzu |
RMSD bond length | 0.007 |
RMSD bond angle | 1.436 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | REFMAC |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 42.230 | 2.110 |
High resolution limit [Å] | 2.050 | 2.050 |
Rmerge | 0.270 | 1.206 |
Rmeas | 0.160 | 1.517 |
Rpim | 0.097 | 0.908 |
Number of reflections | 21125 | 1628 |
<I/σ(I)> | 8.5 | 1.5 |
Completeness [%] | 98.6 | 99 |
Redundancy | 4.8 | 5.1 |
CC(1/2) | 0.994 | 0.468 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 5.9 | 293 | imidazole-Malate pH 5,9 34% PEG 4K, 3mM ADPr, 3 hours soaking with crystallization solutution additioned 15mM Aspartic acid, |