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6QWM

The Transcriptional Regulator PrfA-A218G mutant from Listeria Monocytogenes in complex with a 30-bp operator PrfA-box motif

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsESRF BEAMLINE ID30B
Synchrotron siteESRF
BeamlineID30B
Temperature [K]100
Detector technologyPIXEL
Collection date2017-03-03
DetectorDECTRIS PILATUS3 6M
Wavelength(s)0.9677
Spacegroup nameP 43 21 2
Unit cell lengths78.628, 78.628, 265.122
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution47.060 - 2.900
R-factor0.2365
Rwork0.234
R-free0.29000
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)5lej
RMSD bond length0.003
RMSD bond angle0.533
Data reduction softwareXDS
Data scaling softwareAimless
Phasing softwarePHASER
Refinement softwarePHENIX ((1.10.1_2155: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]47.1003.000
High resolution limit [Å]2.9002.900
Rmerge0.1370.976
Rpim0.0380.261
Number of reflections193131891
<I/σ(I)>18.24
Completeness [%]99.899.9
Redundancy25.727.8
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP8291Droplets of 4 microl protein-DNA solution (ratio 1:1.3) in 20 mM Tris-HCl pH 8.0, 50 mM NaCl, and 1 mM EDTA at 6 mg per ml were mixed with 2 microl reservoir solution consisting of 8% PEG 8000, 100 mM sodium citrate pH 4.6, 100 mM Magnesium acetate and 20% glycerol.

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PDB entries from 2024-05-15

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