6QOP
Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with Fragment 19 (5-fluoroquinazolin-4-ol)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-11-23 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.9686 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 74.133, 78.896, 86.245 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 58.213 - 1.912 |
R-factor | 0.1916 |
Rwork | 0.190 |
R-free | 0.22270 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 1.024 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.15) |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX (1.9_1692) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 78.900 | 78.900 | 2.020 |
High resolution limit [Å] | 1.910 | 6.050 | 1.910 |
Rmerge | 0.062 | 0.042 | 0.776 |
Rmeas | 0.067 | 0.045 | 0.833 |
Rpim | 0.025 | 0.017 | 0.298 |
Total number of observations | 299713 | ||
Number of reflections | 39857 | 1405 | 5743 |
<I/σ(I)> | 16.3 | ||
Completeness [%] | 100.0 | 99.7 | 100 |
Redundancy | 7.5 | 6.4 | 7.7 |
CC(1/2) | 0.999 | 0.999 | 0.811 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 292 | 0.08M Sodium cacodylate pH 6.5 -7.0, 1-2 M Ammonium sulphate |