6Q7W
Crystal structure of PqsR (MvfR) ligand-binding domain in complex with compound 20
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | BESSY BEAMLINE 14.1 |
Synchrotron site | BESSY |
Beamline | 14.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-11-04 |
Detector | DECTRIS PILATUS 2M-F |
Wavelength(s) | 1.0000 |
Spacegroup name | P 65 2 2 |
Unit cell lengths | 121.218, 121.218, 114.555 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 47.718 - 2.820 |
R-factor | 0.2325 |
Rwork | 0.231 |
R-free | 0.26200 |
Structure solution method | FOURIER SYNTHESIS |
Starting model (for MR) | 4jvc |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.17) |
Phasing software | PHENIX |
Refinement software | PHENIX (1.14rc1_3177) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 47.720 | 47.720 | 2.970 |
High resolution limit [Å] | 2.820 | 8.920 | 2.820 |
Rmerge | 0.127 | 0.017 | 1.983 |
Rmeas | 0.130 | 0.017 | 2.023 |
Rpim | 0.026 | 0.004 | 0.401 |
Number of reflections | 12501 | 474 | 1764 |
<I/σ(I)> | 28.7 | ||
Completeness [%] | 99.9 | 99.3 | 99.8 |
Redundancy | 23.9 | 21.6 | 25.1 |
CC(1/2) | 1.000 | 1.000 | 0.842 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 5.6 | 293 | 0.085 M tri-sodium citrate (pH 5.6), 29.8% (v/v) 2-methyl-2-propanol, 15% (v/v) glycerol |