6Q50
Structure of MPT-4, a mannose phosphorylase from Leishmania mexicana, in complex with phosphate ion
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I24 |
Synchrotron site | Diamond |
Beamline | I24 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-11-26 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.969 |
Spacegroup name | P 21 2 21 |
Unit cell lengths | 53.366, 67.194, 96.970 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 67.280 - 1.600 |
R-factor | 0.16241 |
Rwork | 0.160 |
R-free | 0.20006 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2b4w |
RMSD bond length | 0.012 |
RMSD bond angle | 1.742 |
Data reduction software | DIALS (1.8.1-g1afca60c-release-hotfix1) |
Data scaling software | Aimless (0.7.1) |
Phasing software | MOLREP |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 67.190 | 1.630 |
High resolution limit [Å] | 1.600 | 1.600 |
Rmerge | 0.104 | 1.853 |
Rmeas | 0.111 | 1.985 |
Rpim | 0.039 | 0.704 |
Number of reflections | 46829 | 2286 |
<I/σ(I)> | 10.2 | |
Completeness [%] | 100.0 | 100 |
Redundancy | 8 | 8 |
CC(1/2) | 0.998 | 0.459 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7 | 293 | 100 mM PCTP pH 7.0, 25% w/v PEG 1500 |