6Q3P
Atomic resolution crystal structure of an AAB collagen heterotrimer
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | DIAMOND BEAMLINE I03 |
Synchrotron site | Diamond |
Beamline | I03 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-01-16 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.7000 |
Spacegroup name | P 1 |
Unit cell lengths | 19.736, 28.076, 48.384 |
Unit cell angles | 86.36, 86.68, 77.21 |
Refinement procedure
Resolution | 27.340 - 1.030 |
R-factor | 0.1447 |
Rwork | 0.143 |
R-free | 0.17380 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | idealized 16 amino acid triple helix |
RMSD bond length | 0.015 |
RMSD bond angle | 1.604 |
Data reduction software | XDS (20161205) |
Data scaling software | Aimless (0.5.32, CCP4) |
Phasing software | PHASER (2.7.17, CCP4) |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 27.342 | 1.050 |
High resolution limit [Å] | 1.030 | 1.030 |
Rmerge | 0.041 | 0.399 |
Number of reflections | 47206 | 2336 |
<I/σ(I)> | 7.2 | 1.5 |
Completeness [%] | 94.5 | 92.5 |
Redundancy | 1.9 | 1.7 |
CC(1/2) | 0.894 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.8 | 293.15 | 19% PEG monomethyl ether 2K, 0.1M Tris-HCl, pH 8.6 |