6PYW
Crystal Structure of HLA-B*2705-W60A in complex with LRN, a self-peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-03-27 |
Detector | ADSC QUANTUM 210 |
Wavelength(s) | 0.954 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.962, 82.489, 110.024 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 20.200 - 1.380 |
R-factor | 0.204 |
Rwork | 0.204 |
R-free | 0.22000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4g9d |
RMSD bond length | 0.010 |
RMSD bond angle | 1.080 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.1) |
Phasing software | PHASER |
Refinement software | BUSTER (2.10.3) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 36.670 | 36.670 | 1.400 |
High resolution limit [Å] | 1.380 | 7.560 | 1.380 |
Rmerge | 0.053 | 0.031 | 0.827 |
Total number of observations | 770543 | 3681 | 32004 |
Number of reflections | 95569 | 588 | 4403 |
<I/σ(I)> | 20.7 | 48.3 | 2.4 |
Completeness [%] | 99.5 | 87.3 | 93.9 |
Redundancy | 8.1 | 6.3 | 7.3 |
CC(1/2) | 0.999 | 0.997 | 0.789 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 277 | 20-30% PEG 4K, 0.2M Na Acetate and 0.1M Na Citrate pH 5.6 |