6PYJ
Crystal Structure of HLA-B*2705 in complex with LRN, a self-peptide
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-08-14 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9540 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 50.780, 82.704, 104.979 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 28.800 - 1.440 |
R-factor | 0.203 |
Rwork | 0.202 |
R-free | 0.22000 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4g9d |
Data reduction software | XDS |
Data scaling software | Aimless (0.3.11) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.710 | 45.710 | 1.460 |
High resolution limit [Å] | 1.440 | 7.890 | 1.440 |
Rmerge | 0.090 | 0.025 | 1.039 |
Total number of observations | 586220 | 3345 | 27692 |
Number of reflections | 80761 | 571 | 3937 |
<I/σ(I)> | 16.8 | 60.8 | 2.1 |
Completeness [%] | 100.0 | 97.9 | 99.9 |
Redundancy | 7.3 | 5.9 | 7 |
CC(1/2) | 0.999 | 0.999 | 0.597 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.6 | 277 | 20-30% PEG 4K, 0.2M Na Acetate and 0.1M Na Citrate pH 5.6 |