6PPX
Crystal structure of metal-free NeuB, an N-acetylneuraminate synthase from Neisseria meningitidis in complex with malate
Replaces: 3CM4Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU RU300 |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2008-01-29 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 58.070, 76.200, 77.550 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.480 - 1.850 |
R-factor | 0.1904 |
Rwork | 0.188 |
R-free | 0.24250 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1xuz |
RMSD bond length | 0.007 |
RMSD bond angle | 0.806 |
Data reduction software | CrystalClear |
Data scaling software | CrystalClear |
Phasing software | MOLREP |
Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 77.620 | 1.920 |
High resolution limit [Å] | 1.850 | 1.850 |
Rmerge | 0.098 | 0.673 |
Rmeas | 0.104 | |
Rpim | 0.035 | 0.248 |
Number of reflections | 29645 | 2676 |
<I/σ(I)> | 2.53 | 3.1 |
Completeness [%] | 98.5 | |
Redundancy | 3.9 | 3.8 |
CC(1/2) | 0.998 | 0.915 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.2 | 291 | 3% (v/v) MPD 1.75M Malic acid 10mM magnesium chloride 10mM N-acetylneuraminic acid |