6PLI
Crystal Structure of EcDsbA in a complex with purified oxadiazole 11
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-07-13 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.95373 |
Spacegroup name | C 1 2 1 |
Unit cell lengths | 117.745, 64.286, 74.444 |
Unit cell angles | 90.00, 125.91, 90.00 |
Refinement procedure
Resolution | 34.690 - 1.930 |
R-factor | 0.1993 |
Rwork | 0.198 |
R-free | 0.22750 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1fvk |
RMSD bond length | 0.009 |
RMSD bond angle | 0.739 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX (1.14_3211) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 34.690 | 1.980 |
High resolution limit [Å] | 1.930 | 1.930 |
Rmerge | 0.072 | 0.691 |
Rmeas | 0.086 | 0.817 |
Rpim | 0.046 | 0.433 |
Number of reflections | 33581 | 1957 |
<I/σ(I)> | 11 | |
Completeness [%] | 98.9 | 85.6 |
Redundancy | 6.8 | 6.2 |
CC(1/2) | 0.998 | 0.878 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.1 | 293.15 | 11-13 % PEG 8000, 5-7.5% glycerol, 100mM Na Cacodylate pH6.1, 1mM CuCl2 |