6PH7
Crystal structure of bovine opsin with nerol bound
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 23-ID-B |
Synchrotron site | APS |
Beamline | 23-ID-B |
Temperature [K] | 173 |
Detector technology | PIXEL |
Collection date | 2016-10-22 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1.033 |
Spacegroup name | H 3 2 |
Unit cell lengths | 243.137, 243.137, 108.427 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 39.256 - 2.902 |
R-factor | 0.2145 |
Rwork | 0.214 |
R-free | 0.22470 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.662 |
Data reduction software | XDS |
Data scaling software | autoPROC |
Phasing software | PHASER |
Refinement software | PHENIX ((1.10_2155)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 39.730 | 2.912 |
High resolution limit [Å] | 2.900 | 2.902 |
Rmerge | 0.054 | 0.588 |
Rmeas | 0.060 | |
Rpim | 0.024 | 0.330 |
Number of reflections | 26899 | 1749 |
<I/σ(I)> | 20.6 | 2.9 |
Completeness [%] | 99.1 | 97.8 |
Redundancy | 5.9 | 6.6 |
CC(1/2) | 0.999 | 0.861 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 5.5 | 293 | 3.1-3.3 ammonium sulfate, 0.1M sodium acetate buffer, pH 5.5 |