6PED
Crystal structure of HEMK2-TRMT112 complex
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ALS BEAMLINE 5.0.1 |
| Synchrotron site | ALS |
| Beamline | 5.0.1 |
| Temperature [K] | 100 |
| Detector technology | PIXEL |
| Collection date | 2019-06-12 |
| Detector | DECTRIS PILATUS3 6M |
| Wavelength(s) | 0.97741 |
| Spacegroup name | P 61 2 2 |
| Unit cell lengths | 110.539, 110.539, 131.972 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 47.000 - 2.300 |
| R-factor | 0.1948 |
| Rwork | 0.192 |
| R-free | 0.24250 |
| Structure solution method | FOURIER SYNTHESIS |
| Starting model (for MR) | isomorphous PDB entry 6k0x |
| RMSD bond length | 0.013 |
| RMSD bond angle | 1.829 |
| Data reduction software | XDS |
| Data scaling software | Aimless (0.7.4) |
| Phasing software | REFMAC |
| Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
| Overall | Inner shell | Outer shell | |
| Low resolution limit [Å] | 47.860 | 47.860 | 2.380 |
| High resolution limit [Å] | 2.300 | 8.920 | 2.300 |
| Rmerge | 0.072 | 0.028 | 1.386 |
| Rmeas | 0.074 | 0.029 | 1.423 |
| Rpim | 0.017 | 0.008 | 0.320 |
| Total number of observations | 412065 | 6501 | 39419 |
| Number of reflections | 21722 | 461 | 2045 |
| <I/σ(I)> | 27.4 | 83.8 | 2.1 |
| Completeness [%] | 100.0 | 99.4 | 99.9 |
| Redundancy | 19 | 14.1 | 19.3 |
| CC(1/2) | 1.000 | 0.999 | 0.786 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 291 | 2 M sodium/potassium phosphate |
