6PEC
Vaccine-elicited NHP FP-targeting antibody DF2F-e.01 in complex with HIV fusion peptide (residue 512-519)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-ID |
Synchrotron site | APS |
Beamline | 22-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-06-10 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.763, 88.378, 121.276 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 35.712 - 1.746 |
R-factor | 0.1948 |
Rwork | 0.194 |
R-free | 0.21470 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.008 |
RMSD bond angle | 1.253 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | PHENIX (1.8.4_1496) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.770 |
High resolution limit [Å] | 1.740 | 4.720 | 1.740 |
Rmerge | 0.084 | 0.047 | 0.816 |
Rmeas | 0.091 | 0.051 | 0.896 |
Rpim | 0.034 | 0.019 | 0.363 |
Total number of observations | 424862 | ||
Number of reflections | 59700 | 3185 | 2924 |
<I/σ(I)> | 9.6 | ||
Completeness [%] | 98.8 | 97.2 | 97.3 |
Redundancy | 7.1 | 6.7 | 5.7 |
CC(1/2) | 0.997 | 0.850 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 293 | 0.2M calcium acetate, 0.1M Cacodylate pH 6.5, 18% PEG 8000 |