6PE3
Structure of YcaO enzyme from Methanocaldococcus jannaschii in complex with ATP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-D |
Synchrotron site | APS |
Beamline | 21-ID-D |
Temperature [K] | 80 |
Detector technology | PIXEL |
Collection date | 2017-08-05 |
Detector | DECTRIS EIGER X 9M |
Wavelength(s) | 0.979106 |
Spacegroup name | P 63 2 2 |
Unit cell lengths | 106.841, 106.841, 182.556 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 25.000 - 2.300 |
R-factor | 0.20352 |
Rwork | 0.201 |
R-free | 0.25054 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.010 |
RMSD bond angle | 1.531 |
Data scaling software | autoPROC |
Phasing software | PHENIX |
Refinement software | REFMAC (5.8.0158) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 25.600 | 2.340 |
High resolution limit [Å] | 2.300 | 2.300 |
Number of reflections | 26776 | 1846 |
<I/σ(I)> | 19.9 | |
Completeness [%] | 95.6 | |
Redundancy | 30.1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 282 | 0.1 M sodium acetate pH 4.6, 2.0 M ammonium sulfate, 0.02 M taurine |