6P7Q
Structure of E. coli MS115-1 NucC, 5'-pApA bound form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-08-01 |
Detector | DECTRIS EIGER X 16M |
Wavelength(s) | 0.9792 |
Spacegroup name | H 3 2 |
Unit cell lengths | 131.781, 131.781, 252.836 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 55.663 - 1.660 |
R-factor | 0.1601 |
Rwork | 0.159 |
R-free | 0.18460 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6p7o |
RMSD bond length | 0.012 |
RMSD bond angle | 1.025 |
Data reduction software | XDS |
Data scaling software | Aimless |
Phasing software | PHASER |
Refinement software | PHENIX ((1.14_3260: ???)) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 104.020 | 1.690 |
High resolution limit [Å] | 1.660 | 1.660 |
Rmerge | 0.138 | 0.830 |
Rmeas | 0.154 | 0.924 |
Rpim | 0.066 | 0.401 |
Number of reflections | 98697 | 4794 |
<I/σ(I)> | 9.7 | |
Completeness [%] | 99.2 | 97.6 |
Redundancy | 5 | 4.9 |
CC(1/2) | 0.994 | 0.617 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 293 | 17-24% PEG 3350, 0.1 M Na/K tartrate, and 25 mM Tris-HCl pH 8.0 |