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6P6G

Co-crystal Structure of human SMYD3 with Isoxazole Amides Inhibitors

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-D
Synchrotron siteAPS
Beamline21-ID-D
Temperature [K]100
Detector technologyIMAGE PLATE
Collection date2015-08-05
DetectorMAR scanner 345 mm plate
Wavelength(s)1.07805
Spacegroup nameP 21 21 21
Unit cell lengths61.433, 66.636, 107.340
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution56.614 - 1.590
R-factor0.1737
Rwork0.172
R-free0.20020
Structure solution methodMOLECULAR REPLACEMENT
Data reduction softwareDENZO
Data scaling softwareAimless (0.5.27)
Phasing softwarePHENIX
Refinement softwarePHENIX ((1.14_3260))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]66.6401.7101.670
High resolution limit [Å]1.5901.6601.590
Rmerge0.0710.0370.572
Rmeas0.0770.0400.632
Rpim0.0290.0150.263
Total number of observations413998
Number of reflections601841008454
<I/σ(I)>15
Completeness [%]99.697.6
Redundancy6.95.5
CC(1/2)0.9990.9990.871
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP295Sitting Drop, Linbro tray, room temp, reservoir is 10% PEG 3350, 0.2M MgOAc , protein:reservoir is 1:1, streak seed soaking: 2ul 20%PEG 3350, 0.4M MgOAc added to 2ul protein, mix and add 0.3ul to drop, store at 295

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PDB entries from 2024-05-15

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