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6P61

Structure of a Glycosyltransferase from Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 5.0.2
Synchrotron siteALS
Beamline5.0.2
Temperature [K]100
Detector technologyPIXEL
Collection date2019-05-14
DetectorDECTRIS PILATUS3 6M
Wavelength(s)1.00003
Spacegroup nameP 1 21 1
Unit cell lengths56.250, 123.170, 76.770
Unit cell angles90.00, 92.44, 90.00
Refinement procedure
Resolution33.152 - 1.950
R-factor0.1519
Rwork0.151
R-free0.18350
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3BCV_B as per RosettaMR
RMSD bond length0.007
RMSD bond angle0.743
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMR-Rosetta
Refinement softwarePHENIX ((dev_3500))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]33.15233.1522.000
High resolution limit [Å]1.9508.7201.950
Rmerge0.0510.0200.373
Rmeas0.0610.0240.477
Total number of observations246869
Number of reflections752398775140
<I/σ(I)>14.8243.452.16
Completeness [%]99.098.192.2
Redundancy3.2813.2312.29
CC(1/2)0.9990.9990.797
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP5.5290Optimization screen based on MCSG-1, condition F3: 200mM Ammonium citrate dibasic pH 5.5, 18% (w/V) PEG 3350: LpboA.19148.a.B1.PS38508 at 26.29mg/ml, seeded: cryo: 20% EG: tray 309474 e3: puck irc8-7. Protein purified in 20mM HEPES pH7, 300mM NaCl, 5% Glycerol, 1mM TCEP

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