6OZJ
Crystal structure of Mus musculus (Mm) Endonuclease V in complex with a 23mer RNA oligo containing an inosine in the absence of divalent cation
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 22-BM |
Synchrotron site | APS |
Beamline | 22-BM |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-12-10 |
Detector | MARMOSAIC 225 mm CCD |
Wavelength(s) | 1 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 72.341, 73.582, 154.187 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 42.873 - 2.247 |
R-factor | 0.1583 |
Rwork | 0.156 |
R-free | 0.19380 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.951 |
Data reduction software | HKL-2000 |
Data scaling software | Aimless (0.5.15) |
Phasing software | MOLREP |
Refinement software | PHENIX (1.10.1_2155) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.920 | 48.920 | 2.320 |
High resolution limit [Å] | 2.250 | 8.990 | 2.250 |
Total number of observations | 40002 | 715 | 3554 |
Number of reflections | 40002 | 715 | 3554 |
<I/σ(I)> | 15 | 35.9 | 4.1 |
Completeness [%] | 99.8 | 99.3 | 98.3 |
Redundancy | 1 | 1 | 1 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 293 | 0.2 M potassium sodium tartrate, 20-25% w/v PEG3350 |