6OYB
Crystal structure of H62G mutant of human macrophage migration inhibitory factor
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-27 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 67.990, 68.211, 87.002 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.150 - 1.530 |
R-factor | 0.1159 |
Rwork | 0.113 |
R-free | 0.16120 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3djh |
RMSD bond length | 0.018 |
RMSD bond angle | 1.759 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.560 |
High resolution limit [Å] | 1.530 | 4.150 | 1.530 |
Rmerge | 0.052 | 0.047 | 0.331 |
Rmeas | 0.055 | 0.048 | 0.366 |
Rpim | 0.016 | 0.012 | 0.154 |
Total number of observations | 533218 | ||
Number of reflections | 61780 | 3332 | 3048 |
<I/σ(I)> | 17.6 | ||
Completeness [%] | 100.0 | 100 | 99.8 |
Redundancy | 8.6 | 16.9 | 5.4 |
CC(1/2) | 0.999 | 0.928 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 7.5 | 293 | 2 M ammonium sulfate, 3 % 2-propanol, 0.1 M Tris-HCl, pH 7.5 |