6OWL
RNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMP
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.2.2 |
Synchrotron site | ALS |
Beamline | 8.2.2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-03-29 |
Detector | MAR CCD 130 mm |
Wavelength(s) | 1 |
Spacegroup name | H 3 2 |
Unit cell lengths | 43.483, 43.483, 127.538 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 22.000 - 2.000 |
R-factor | 0.24152 |
Rwork | 0.237 |
R-free | 0.31721 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6c8d |
RMSD bond length | 0.017 |
RMSD bond angle | 2.280 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 50.000 | 2.070 |
High resolution limit [Å] | 2.000 | 2.000 |
Rmerge | 0.082 | 0.564 |
Rmeas | 0.090 | 0.627 |
Number of reflections | 3409 | 332 |
<I/σ(I)> | 19.3 | 2.3 |
Completeness [%] | 99.7 | 100 |
Redundancy | 7.1 | 5.3 |
CC(1/2) | 0.982 | 0.940 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6 | 293 | 0.08 M Sodium chloride, 0.012 M Potassium chloride, 0.02 M Magnesium chloride hexahydrate, 0.04 M Sodium cacodylate trihydrate pH 6.0, 30% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.012 M Spermine tetrahydrochloride |