6OWL
RNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMP
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ALS BEAMLINE 8.2.2 |
| Synchrotron site | ALS |
| Beamline | 8.2.2 |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2019-03-29 |
| Detector | MAR CCD 130 mm |
| Wavelength(s) | 1 |
| Spacegroup name | H 3 2 |
| Unit cell lengths | 43.483, 43.483, 127.538 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 22.000 - 2.000 |
| R-factor | 0.24152 |
| Rwork | 0.237 |
| R-free | 0.31721 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 6c8d |
| RMSD bond length | 0.017 |
| RMSD bond angle | 2.280 |
| Data reduction software | HKL-2000 |
| Data scaling software | HKL-2000 |
| Phasing software | PHASER |
| Refinement software | REFMAC (5.8.0189) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.000 | 2.070 |
| High resolution limit [Å] | 2.000 | 2.000 |
| Rmerge | 0.082 | 0.564 |
| Rmeas | 0.090 | 0.627 |
| Number of reflections | 3409 | 332 |
| <I/σ(I)> | 19.3 | 2.3 |
| Completeness [%] | 99.7 | 100 |
| Redundancy | 7.1 | 5.3 |
| CC(1/2) | 0.982 | 0.940 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 6 | 293 | 0.08 M Sodium chloride, 0.012 M Potassium chloride, 0.02 M Magnesium chloride hexahydrate, 0.04 M Sodium cacodylate trihydrate pH 6.0, 30% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.012 M Spermine tetrahydrochloride |






