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6OWL

RNA oligonucleotides with 3'-arabino guanosine co-crystallized with GMP

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsALS BEAMLINE 8.2.2
Synchrotron siteALS
Beamline8.2.2
Temperature [K]100
Detector technologyCCD
Collection date2019-03-29
DetectorMAR CCD 130 mm
Wavelength(s)1
Spacegroup nameH 3 2
Unit cell lengths43.483, 43.483, 127.538
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution22.000 - 2.000
R-factor0.24152
Rwork0.237
R-free0.31721
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6c8d
RMSD bond length0.017
RMSD bond angle2.280
Data reduction softwareHKL-2000
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0189)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.070
High resolution limit [Å]2.0002.000
Rmerge0.0820.564
Rmeas0.0900.627
Number of reflections3409332
<I/σ(I)>19.32.3
Completeness [%]99.7100
Redundancy7.15.3
CC(1/2)0.9820.940
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP62930.08 M Sodium chloride, 0.012 M Potassium chloride, 0.02 M Magnesium chloride hexahydrate, 0.04 M Sodium cacodylate trihydrate pH 6.0, 30% v/v (+/-)-2-Methyl-2,4-pentanediol, 0.012 M Spermine tetrahydrochloride

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PDB entries from 2024-05-15

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