Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6OKH

Structure of an uncharacterized protein from Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197)

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyCCD
Collection date2019-03-06
DetectorRIGAKU SATURN 944+
Wavelength(s)1.5418
Spacegroup nameC 2 2 21
Unit cell lengths74.880, 101.120, 108.660
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution45.841 - 1.850
R-factor0.1708
Rwork0.169
R-free0.19970
Structure solution methodSAD
RMSD bond length0.008
RMSD bond angle0.878
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwarePHASER
Refinement softwarePHENIX ((1.15rc1_3423))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]45.84145.8411.900
High resolution limit [Å]1.8508.2701.850
Rmerge0.0430.0180.559
Rmeas0.0450.0190.613
Number of reflections355364452591
<I/σ(I)>37.34129.033.4
Completeness [%]100.098.7100
Redundancy10.80212.2116.024
CC(1/2)1.0001.0000.902
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP7.8290Molecular Dimensions LMB screen, b10: 24 % (v/v) Ethanol 0.1 M HEPES pH 7.8, 40mM Magnesium chloride: LpboA.19679.a.B1.PS38456 at 15mg/ml, incubation at 4C: cryo: 20% EG: tray 308142 b10: puck kzx0-13. For experimental phasing, a crystal from the same drop was incubated for 20sec in a solution of 80% reservoir and 20% 2.5M Sodium iodide in ethylene glycol, and vitrified: tray: 308142 B10: puck: kzx0-9

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon