6OKH
Structure of an uncharacterized protein from Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-03-06 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | C 2 2 21 |
Unit cell lengths | 74.880, 101.120, 108.660 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 45.841 - 1.850 |
R-factor | 0.1708 |
Rwork | 0.169 |
R-free | 0.19970 |
Structure solution method | SAD |
RMSD bond length | 0.008 |
RMSD bond angle | 0.878 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.15rc1_3423)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 45.841 | 45.841 | 1.900 |
High resolution limit [Å] | 1.850 | 8.270 | 1.850 |
Rmerge | 0.043 | 0.018 | 0.559 |
Rmeas | 0.045 | 0.019 | 0.613 |
Number of reflections | 35536 | 445 | 2591 |
<I/σ(I)> | 37.34 | 129.03 | 3.4 |
Completeness [%] | 100.0 | 98.7 | 100 |
Redundancy | 10.802 | 12.211 | 6.024 |
CC(1/2) | 1.000 | 1.000 | 0.902 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.8 | 290 | Molecular Dimensions LMB screen, b10: 24 % (v/v) Ethanol 0.1 M HEPES pH 7.8, 40mM Magnesium chloride: LpboA.19679.a.B1.PS38456 at 15mg/ml, incubation at 4C: cryo: 20% EG: tray 308142 b10: puck kzx0-13. For experimental phasing, a crystal from the same drop was incubated for 20sec in a solution of 80% reservoir and 20% 2.5M Sodium iodide in ethylene glycol, and vitrified: tray: 308142 B10: puck: kzx0-9 |