6OK8
Crystal structure of Staphylococcal nuclease variant Delta+PHS K127L at cryogenic temperature
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E SUPERBRIGHT |
Temperature [K] | 77 |
Detector technology | PIXEL |
Collection date | 2018-03-08 |
Detector | DECTRIS PILATUS 200K |
Wavelength(s) | 1.54 |
Spacegroup name | P 41 |
Unit cell lengths | 48.097, 48.097, 63.122 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 48.100 - 1.800 |
R-factor | 0.2001 |
Rwork | 0.199 |
R-free | 0.22530 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3bdc |
RMSD bond length | 0.015 |
RMSD bond angle | 1.866 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.8.1) |
Refinement software | REFMAC |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.100 | 48.100 | 1.850 |
High resolution limit [Å] | 1.800 | 8.050 | 1.800 |
Rmerge | 0.030 | 0.019 | 0.101 |
Rmeas | 0.032 | 0.020 | 0.134 |
Number of reflections | 12313 | 155 | 487 |
<I/σ(I)> | 35.75 | 60.76 | 5.34 |
Completeness [%] | 91.8 | 97.5 | 48.7 |
Redundancy | 5.877 | 5.768 | 1.85 |
CC(1/2) | 1.000 | 1.000 | 0.978 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 8 | 277 | 46% MPD, 25 mM potassium phosphate, calcium chloride, THP |