6OE6
Structure of a Uncharacterized protein from Leptospira interrogans serogroup Icterohaemorrhagiae serovar Copenhageni (strain Fiocruz L1-130)
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-03-07 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 31 |
Unit cell lengths | 50.630, 50.630, 99.480 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 40.122 - 1.700 |
R-factor | 0.1775 |
Rwork | 0.176 |
R-free | 0.20790 |
Structure solution method | SAD |
RMSD bond length | 0.008 |
RMSD bond angle | 0.872 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER |
Refinement software | PHENIX ((1.15rc1_3423)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.122 | 40.122 | 1.740 |
High resolution limit [Å] | 1.700 | 7.600 | 1.700 |
Rmerge | 0.038 | 0.037 | 0.485 |
Rmeas | 0.043 | 0.043 | 0.547 |
Total number of observations | 150310 | ||
Number of reflections | 31388 | 343 | 2372 |
<I/σ(I)> | 22.21 | 43.6 | 2.91 |
Completeness [%] | 99.9 | 94.5 | 99.9 |
Redundancy | 4.789 | 4.385 | 4.706 |
CC(1/2) | 0.999 | 0.997 | 0.842 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 290 | Microlytic MCSG1 screen F8: 3500mM sodium formate: LpinA.19858.a.B2.PS38529 at 23.59mg/ml: cryo: direct: tray 306183 F8: puck lbo4-3. For experimental phasing, a crystal from the same well was incubated for 10sec in a solution of 90% reservoir and 10% 2.5M Sodium iodide in ethylene glycol and vitrified: tray: 306143 F8: puck: kzx0-14 |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 290 | Microlytic MCSG1 screen F8: 3500mM sodium formate: LpinA.19858.a.B2.PS38529 at 23.59mg/ml: cryo: direct: tray 306183 F8: puck lbo4-3. For experimental phasing, a crystal from the same well was incubated for 10sec in a solution of 90% reservoir and 10% 2.5M Sodium iodide in ethylene glycol and vitrified: tray: 306143 F8: puck: kzx0-14 |