6OBM
Ricin A chain bound to VHH antibody V6A7
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-E |
Synchrotron site | APS |
Beamline | 24-ID-E |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2016-11-09 |
Detector | ADSC QUANTUM 315 |
Wavelength(s) | 0.979 |
Spacegroup name | I 4 2 2 |
Unit cell lengths | 102.654, 102.654, 156.876 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.595 - 2.495 |
R-factor | 0.2113 |
Rwork | 0.209 |
R-free | 0.26060 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.003 |
RMSD bond angle | 0.732 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER (2.5.6) |
Refinement software | PHENIX ((1.11.1_2575)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.540 |
High resolution limit [Å] | 2.495 | 6.780 | 2.500 |
Rmerge | 0.104 | 0.033 | 1.545 |
Rmeas | 0.108 | 0.034 | 1.659 |
Rpim | 0.029 | 0.009 | 0.577 |
Number of reflections | 14935 | 842 | 711 |
<I/σ(I)> | 7.3 | ||
Completeness [%] | 99.7 | 99.9 | 94.8 |
Redundancy | 13.4 | 12.9 | 7 |
CC(1/2) | 0.999 | 0.480 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 295 | 200 mM potassium sulfate and 20% PEG 3,350 |