6OBG
Ricin A chain bound to VHH antibody V8E6
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-03-17 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 59.795, 77.885, 92.597 |
Unit cell angles | 90.00, 98.95, 90.00 |
Refinement procedure
Resolution | 45.735 - 1.996 |
R-factor | 0.1905 |
Rwork | 0.189 |
R-free | 0.21800 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.006 |
RMSD bond angle | 0.797 |
Data reduction software | HKL-2000 |
Data scaling software | SCALEPACK |
Phasing software | PHASER |
Refinement software | PHENIX (1.11.1_2575) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 2.030 |
High resolution limit [Å] | 1.996 | 5.430 | 2.000 |
Rmerge | 0.081 | 0.057 | 0.710 |
Rmeas | 0.097 | 0.067 | 0.865 |
Rpim | 0.052 | 0.036 | 0.487 |
Number of reflections | 54931 | 2816 | 2570 |
<I/σ(I)> | 5.3 | ||
Completeness [%] | 96.2 | 95.7 | 91.8 |
Redundancy | 3.2 | 3.3 | 2.9 |
CC(1/2) | 0.995 | 0.687 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 6 | 295 | 100 mM MES (pH 6.0), 170 mM zinc acetate, 6% PEG 8,000, and 0.5% ethyl acetate |