6O8M
Crystal Structure of C9S apo Sulfide-responsive transcriptional repressor (SqrR) from Rhodobacter capsulated bound to diamide (tetramethylazodicarboxamide).
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | ALS BEAMLINE 4.2.2 |
| Synchrotron site | ALS |
| Beamline | 4.2.2 |
| Temperature [K] | 100 |
| Detector technology | CMOS |
| Collection date | 2017-07-07 |
| Detector | RDI CMOS_8M |
| Wavelength(s) | 1.000031 |
| Spacegroup name | P 61 2 2 |
| Unit cell lengths | 46.509, 46.509, 158.468 |
| Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
| Resolution | 40.278 - 1.460 |
| R-factor | 0.1462 |
| Rwork | 0.145 |
| R-free | 0.17750 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | 3pqk |
| RMSD bond length | 0.008 |
| RMSD bond angle | 0.998 |
| Data reduction software | XDS |
| Data scaling software | Aimless |
| Phasing software | PHASER |
| Refinement software | PHENIX (1.14_3260) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 52.820 | 1.550 |
| High resolution limit [Å] | 1.460 | 1.460 |
| Rmerge | 0.944 | |
| Rmeas | 0.051 | 0.984 |
| Rpim | 0.012 | 0.273 |
| Number of reflections | 17998 | 2546 |
| <I/σ(I)> | 33.9 | 2.4 |
| Completeness [%] | 99.9 | 100 |
| Redundancy | 18.4 | 12.5 |
| CC(1/2) | 1.000 | 0.875 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, HANGING DROP | 293 | Crystallization buffer : sodium citrate 1.8 M pH=6.4, Protein buffer: 20 mM Tris pH=8, 200 mM NaCl, 2mM EDTA, SqrR 6 mg/ml |






