6O4Y
Structure of HLA-A2:01 with peptide MM91
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL9-2 |
Synchrotron site | SSRL |
Beamline | BL9-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-11-20 |
Detector | DECTRIS PILATUS3 S 6M |
Wavelength(s) | 0.979 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 52.990, 80.861, 56.933 |
Unit cell angles | 90.00, 113.32, 90.00 |
Refinement procedure
Resolution | 32.000 - 1.580 |
R-factor | 0.18 |
Rwork | 0.179 |
R-free | 0.20490 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5enw |
RMSD bond length | 0.006 |
RMSD bond angle | 1.299 |
Data reduction software | HKL-2000 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 40.000 | 40.000 | 1.620 |
High resolution limit [Å] | 1.580 | 3.710 | 1.580 |
Rmerge | 0.054 | 0.045 | 0.350 |
Rmeas | 0.064 | 0.053 | 0.429 |
Rpim | 0.033 | 0.027 | 0.242 |
Number of reflections | 58659 | 4688 | 4114 |
<I/σ(I)> | 9.4 | ||
Completeness [%] | 96.5 | 98.2 | 88.4 |
Redundancy | 3.4 | 3.6 | 2.8 |
CC(1/2) | 0.995 | 0.835 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 295.15 | 30% PEG 4000, 0.1M TRIS-HCL PH 8.5, 0.2M LITHIUM SULFATE |