6NXV
Crystal structure of the theta class glutathione S-transferase from the citrus canker pathogen Xanthomonas axonopodis pv. citri, apo form
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | IMAGE PLATE |
Collection date | 2018-06-09 |
Detector | RIGAKU RAXIS IV++ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 87.159, 105.500, 124.320 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 29.813 - 2.750 |
R-factor | 0.196 |
Rwork | 0.194 |
R-free | 0.24130 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6nv6 |
Data reduction software | iMOSFLM (7.2.2) |
Data scaling software | SCALA (3.3.22) |
Phasing software | PHASER (2.8.2) |
Refinement software | PHENIX (1.14-3260) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 80.439 | 30.000 | 2.900 |
High resolution limit [Å] | 2.750 | 2.900 | 2.750 |
Rmerge | 0.121 | 0.686 | |
Rmeas | 0.148 | 0.148 | 0.842 |
Rpim | 0.063 | 0.063 | 0.356 |
Total number of observations | 159325 | ||
Number of reflections | 30033 | 30033 | 4282 |
<I/σ(I)> | 8.9 | 8.9 | 2 |
Completeness [%] | 98.8 | 98.6 | 97.1 |
Redundancy | 5.3 | 5.3 | 5.4 |
CC(1/2) | 0.994 | 0.752 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.1 | 273 | 0.1M Bis-Tris, pH 7.1, 0.2M magnesium chloride, 26% PEG 3,350. Crystals appear in 2-3 days and grow up to 6-7 days |