6NXK
Ubiquitin binding variants
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 24-ID-C |
Synchrotron site | APS |
Beamline | 24-ID-C |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2015-08-03 |
Detector | DECTRIS PILATUS 6M-F |
Wavelength(s) | 0.97920 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 58.893, 63.368, 100.135 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 53.550 - 2.200 |
R-factor | 0.22287 |
Rwork | 0.221 |
R-free | 0.26620 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 4s1z 4YII chain A |
RMSD bond length | 0.010 |
RMSD bond angle | 1.340 |
Data reduction software | XDS |
Data scaling software | XDS |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0135) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 53.550 | 2.270 |
High resolution limit [Å] | 2.200 | 2.200 |
Rmerge | 0.069 | 0.583 |
Rpim | 0.036 | 0.303 |
Number of reflections | 17815 | |
<I/σ(I)> | 12 | |
Completeness [%] | 96.5 | 99 |
Redundancy | 4.4 | 4.4 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 277.15 | 0.1M HEPES pH 7.7, 27.5% PEG3350, 2.5mM APC2 WHB (735-C) + 2.08mM Ubiquitin protein co-mixed |