6NWN
Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with glutamic acid linked compound 10
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX2 |
Synchrotron site | Australian Synchrotron |
Beamline | MX2 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-10-26 |
Detector | ADSC QUANTUM 315r |
Wavelength(s) | 0.9537 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 54.712, 104.614, 153.628 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.234 - 2.005 |
R-factor | 0.1863 |
Rwork | 0.184 |
R-free | 0.22550 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6cve |
Data reduction software | XDS |
Data scaling software | Aimless (0.7.2) |
Phasing software | PHASER |
Refinement software | PHENIX ((1.11.1_2575)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 48.480 | 48.480 | 2.060 |
High resolution limit [Å] | 2.000 | 8.970 | 2.000 |
Rmerge | 0.069 | 0.041 | 0.782 |
Rmeas | 0.072 | 0.043 | 0.816 |
Rpim | 0.019 | 0.012 | 0.229 |
Total number of observations | 812798 | 9192 | 52233 |
Number of reflections | 59942 | 778 | 4231 |
<I/σ(I)> | 16.9 | 43.8 | 2.5 |
Completeness [%] | 99.7 | 99.4 | 96.7 |
Redundancy | 13.6 | 11.8 | 12.3 |
CC(1/2) | 0.999 | 0.999 | 0.889 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289.15 | 0.7 M sodium citrate, 0.1 M Tris pH 7 and 20% glycerol |