6NUP
Structure of thioredoxin (trxA) from Rickettsia prowazekii str. Madrid E.
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU FR-E+ SUPERBRIGHT |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2019-01-30 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 32.740, 45.160, 60.930 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 36.281 - 1.600 |
R-factor | 0.1672 |
Rwork | 0.163 |
R-free | 0.20600 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2yj7A as per Morda |
RMSD bond length | 0.008 |
RMSD bond angle | 0.978 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | MoRDa |
Refinement software | PHENIX ((dev_3374)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 36.281 | 36.281 | 1.640 |
High resolution limit [Å] | 1.600 | 7.160 | 1.600 |
Rmerge | 0.064 | 0.043 | 0.406 |
Rmeas | 0.066 | 0.044 | 0.450 |
Total number of observations | 192503 | ||
Number of reflections | 12337 | 173 | 835 |
<I/σ(I)> | 27.99 | 72.08 | 3.66 |
Completeness [%] | 99.1 | 100 | 91.5 |
Redundancy | 15.604 | 22.046 | 5.186 |
CC(1/2) | 1.000 | 1.000 | 0.917 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 6.5 | 290 | Rigaku Reagents Precipitant Synergy screen, condition #64: 25% PEG 3350, 15% Propanol-2, 100mM Ammonium-citrate tribasic / citric acid pH 4.5: RiprA.00029.a.A1.PB00094 at 2mg/ml: cryo: direct: puck uwk6-15 |