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6NUP

Structure of thioredoxin (trxA) from Rickettsia prowazekii str. Madrid E.

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU FR-E+ SUPERBRIGHT
Temperature [K]100
Detector technologyCCD
Collection date2019-01-30
DetectorRIGAKU SATURN 944+
Wavelength(s)1.5418
Spacegroup nameP 21 21 21
Unit cell lengths32.740, 45.160, 60.930
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution36.281 - 1.600
R-factor0.1672
Rwork0.163
R-free0.20600
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)2yj7A as per Morda
RMSD bond length0.008
RMSD bond angle0.978
Data reduction softwareXDS
Data scaling softwareXSCALE
Phasing softwareMoRDa
Refinement softwarePHENIX ((dev_3374))
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]36.28136.2811.640
High resolution limit [Å]1.6007.1601.600
Rmerge0.0640.0430.406
Rmeas0.0660.0440.450
Total number of observations192503
Number of reflections12337173835
<I/σ(I)>27.9972.083.66
Completeness [%]99.110091.5
Redundancy15.60422.0465.186
CC(1/2)1.0001.0000.917
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.5290Rigaku Reagents Precipitant Synergy screen, condition #64: 25% PEG 3350, 15% Propanol-2, 100mM Ammonium-citrate tribasic / citric acid pH 4.5: RiprA.00029.a.A1.PB00094 at 2mg/ml: cryo: direct: puck uwk6-15

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