6NPB
X-ray crystal structure of TmpA, 2-trimethylaminoethylphosphonate hydroxylase, with Fe and 2OG
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 21-ID-G |
Synchrotron site | APS |
Beamline | 21-ID-G |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2015-10-12 |
Detector | MARMOSAIC 300 mm CCD |
Wavelength(s) | 1.0 |
Spacegroup name | P 41 21 2 |
Unit cell lengths | 87.051, 87.051, 220.696 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 50.000 - 1.730 |
R-factor | 0.194 |
Rwork | 0.193 |
R-free | 0.21220 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 3o2g |
RMSD bond length | 0.005 |
RMSD bond angle | 1.022 |
Data scaling software | HKL-2000 |
Phasing software | PHASER |
Refinement software | REFMAC (5.8.0073) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.760 |
High resolution limit [Å] | 1.730 | 4.690 | 1.730 |
Rmerge | 0.065 | 0.028 | 0.871 |
Rmeas | 0.070 | 0.029 | 0.931 |
Rpim | 0.024 | 0.010 | 0.323 |
Total number of observations | 721833 | ||
Number of reflections | 88259 | ||
<I/σ(I)> | 10.2 | ||
Completeness [%] | 98.8 | 94.7 | 99.9 |
Redundancy | 8.2 | 7.9 | 7.9 |
CC(1/2) | 0.999 | 0.776 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 295 | 15 mg/mL TmpA, 1.0-1.4 M lithium sulfate, 1.6-1.8 M ammonium sulfate |