Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6NPB

X-ray crystal structure of TmpA, 2-trimethylaminoethylphosphonate hydroxylase, with Fe and 2OG

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 21-ID-G
Synchrotron siteAPS
Beamline21-ID-G
Temperature [K]100
Detector technologyCCD
Collection date2015-10-12
DetectorMARMOSAIC 300 mm CCD
Wavelength(s)1.0
Spacegroup nameP 41 21 2
Unit cell lengths87.051, 87.051, 220.696
Unit cell angles90.00, 90.00, 90.00
Refinement procedure
Resolution50.000 - 1.730
R-factor0.194
Rwork0.193
R-free0.21220
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)3o2g
RMSD bond length0.005
RMSD bond angle1.022
Data scaling softwareHKL-2000
Phasing softwarePHASER
Refinement softwareREFMAC (5.8.0073)
Data quality characteristics
 OverallInner shellOuter shell
Low resolution limit [Å]50.00050.0001.760
High resolution limit [Å]1.7304.6901.730
Rmerge0.0650.0280.871
Rmeas0.0700.0290.931
Rpim0.0240.0100.323
Total number of observations721833
Number of reflections88259
<I/σ(I)>10.2
Completeness [%]98.894.799.9
Redundancy8.27.97.9
CC(1/2)0.9990.776
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP29515 mg/mL TmpA, 1.0-1.4 M lithium sulfate, 1.6-1.8 M ammonium sulfate

239149

PDB entries from 2025-07-23

PDB statisticsPDBj update infoContact PDBjnumon