6NNZ
Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with fragment analogue 4
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-03-31 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.9537 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 55.610, 108.350, 153.750 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 41.603 - 2.300 |
R-factor | 0.2582 |
Rwork | 0.256 |
R-free | 0.29290 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6cve |
RMSD bond length | 0.010 |
RMSD bond angle | 1.484 |
Data reduction software | XDS |
Data scaling software | Aimless (0.5.31) |
Phasing software | PHASER (2.7.17) |
Refinement software | PHENIX ((1.11.1_2575)) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 62.700 | 62.700 | 2.380 |
High resolution limit [Å] | 2.300 | 8.910 | 2.300 |
Rmerge | 0.195 | 0.068 | 3.307 |
Rmeas | 0.204 | 0.072 | 3.448 |
Rpim | 0.058 | 0.022 | 0.957 |
Total number of observations | 460196 | 8779 | 45477 |
Number of reflections | 39063 | 837 | 3883 |
<I/σ(I)> | 8.6 | 22.9 | 0.8 |
Completeness [%] | 92.8 | 99.2 | 95.8 |
Redundancy | 11.8 | 10.5 | 11.7 |
CC(1/2) | 0.993 | 0.997 | 0.854 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289.15 | 1.2 - 1.7 M ammonium sulfate, 0.1 M Tris pH 8, 10-15% glycerol |