6NMZ
Crystal structure of Mycobacterium tuberculosis dethiobiotin synthetase in complex with an intentionally produced fragment degradation product B9D
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | AUSTRALIAN SYNCHROTRON BEAMLINE MX1 |
Synchrotron site | Australian Synchrotron |
Beamline | MX1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-02-25 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.9537 |
Spacegroup name | P 21 21 21 |
Unit cell lengths | 56.070, 106.170, 152.780 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 38.549 - 2.400 |
R-factor | 0.214 |
Rwork | 0.210 |
R-free | 0.28790 |
Structure solution method | MOLECULAR REPLACEMENT |
RMSD bond length | 0.007 |
RMSD bond angle | 0.983 |
Data scaling software | Aimless (0.5.31) |
Phasing software | PHASER |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 62.010 | 62.010 | 2.490 |
High resolution limit [Å] | 2.400 | 8.980 | 2.400 |
Rmerge | 0.261 | 0.057 | 2.610 |
Rmeas | 0.279 | 0.061 | 2.773 |
Rpim | 0.094 | 0.021 | 0.900 |
Total number of observations | 325686 | 6442 | 32362 |
Number of reflections | 35543 | 806 | 3471 |
<I/σ(I)> | 7 | 22.8 | 1 |
Completeness [%] | 97.4 | 99.2 | 92.1 |
Redundancy | 9.2 | 8 | 9.3 |
CC(1/2) | 0.984 | 0.997 | 0.345 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 289.15 | 1.2 - 1.7 M ammonium sulfate, 0.1 M Tris pH 8, 10-15% glycerol |