6NLQ
Human Mitochondrial Alanyl-tRNA Synthetase C-terminal domain
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRL BEAMLINE BL12-2 |
Synchrotron site | SSRL |
Beamline | BL12-2 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2017-12-18 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 0.97946 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 55.190, 66.950, 56.480 |
Unit cell angles | 90.00, 116.42, 90.00 |
Refinement procedure
Resolution | 38.709 - 1.150 |
R-factor | 0.1592 |
Rwork | 0.159 |
R-free | 0.17230 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5t5s |
RMSD bond length | 0.012 |
RMSD bond angle | 1.461 |
Data reduction software | XDS |
Data scaling software | XSCALE |
Phasing software | PHASER (2.5.7) |
Refinement software | PHENIX |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 38.709 | 38.709 | 1.180 |
High resolution limit [Å] | 1.150 | 5.140 | 1.150 |
Rmerge | 0.036 | 0.046 | 0.150 |
Rmeas | 0.043 | 0.055 | 0.189 |
Total number of observations | 403060 | ||
Number of reflections | 123979 | 1393 | 6841 |
<I/σ(I)> | 20.32 | 35.05 | 6.79 |
Completeness [%] | 95.0 | 91.2 | 71.3 |
Redundancy | 3.251 | 3.317 | 2.683 |
CC(1/2) | 0.997 | 0.989 | 0.964 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | EVAPORATION | 7 | 298 | 0.1 M Tris-HCl, 100 mM calcium chloride, 18% PEG3350 |