6NJQ
Structure of TBP-Hoogsteen containing DNA complex
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | ALS BEAMLINE 8.3.1 |
Synchrotron site | ALS |
Beamline | 8.3.1 |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-14 |
Detector | DECTRIS PILATUS 6M |
Wavelength(s) | 1.01 |
Spacegroup name | P 1 21 1 |
Unit cell lengths | 41.299, 57.967, 149.752 |
Unit cell angles | 90.00, 96.50, 90.00 |
Refinement procedure
Resolution | 148.789 - 2.750 |
R-factor | 0.2348 |
Rwork | 0.230 |
R-free | 0.27770 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 1qn3 |
RMSD bond length | 0.004 |
RMSD bond angle | 0.715 |
Data reduction software | MOSFLM |
Data scaling software | SCALA |
Phasing software | MOLREP |
Refinement software | PHENIX (1.12_2829) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 148.790 | 2.900 |
High resolution limit [Å] | 2.750 | 2.750 |
Rpim | 0.074 | 0.244 |
Number of reflections | 18008 | 2622 |
<I/σ(I)> | 7.3 | |
Completeness [%] | 96.5 | |
Redundancy | 3 | |
CC(1/2) | 0.970 | 0.824 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 298 | 40 mM MES, 100 mM KCl, 4 mM MgCl2, 14% glycerol, 300 mM ammonium acetate |