6NHU
Crystal Structure of the Beta Lactamase Class D YbxI from Agrobacterium fabrum
Experimental procedure
| Experimental method | SINGLE WAVELENGTH |
| Source type | SYNCHROTRON |
| Source details | APS BEAMLINE 19-BM |
| Synchrotron site | APS |
| Beamline | 19-BM |
| Temperature [K] | 100 |
| Detector technology | CCD |
| Collection date | 2018-10-19 |
| Detector | ADSC QUANTUM 210r |
| Wavelength(s) | 0.97918 |
| Spacegroup name | P 1 21 1 |
| Unit cell lengths | 49.879, 165.957, 75.428 |
| Unit cell angles | 90.00, 90.02, 90.00 |
Refinement procedure
| Resolution | 44.608 - 2.300 |
| R-factor | 0.1888 |
| Rwork | 0.187 |
| R-free | 0.22270 |
| Structure solution method | MOLECULAR REPLACEMENT |
| Starting model (for MR) | PDBID 4GN2 |
| RMSD bond length | 0.002 |
| RMSD bond angle | 0.573 |
| Data reduction software | HKL-3000 |
| Data scaling software | HKL-3000 |
| Phasing software | HKL-3000 |
| Refinement software | PHENIX ((1.13_2998: ???)) |
Data quality characteristics
| Overall | Outer shell | |
| Low resolution limit [Å] | 50.000 | 2.340 |
| High resolution limit [Å] | 2.300 | 2.300 |
| Rmerge | 0.160 | 0.706 |
| Number of reflections | 54045 | 2266 |
| <I/σ(I)> | 14 | 1.3 |
| Completeness [%] | 97.3 | 83.2 |
| Redundancy | 4.4 | 3.2 |
| CC(1/2) | 0.956 | 0.597 |
Crystallization Conditions
| crystal ID | method | pH | temperature | details |
| 1 | VAPOR DIFFUSION, SITTING DROP | 7.8 | 289 | 0.04 M potassium phosphate, 16 %(w/v) PEG8000, 20 % glycerol |
