Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6NHS

Crystal Structure of the Beta Lactamase Class D YbXI from Nostoc

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeSYNCHROTRON
Source detailsAPS BEAMLINE 19-BM
Synchrotron siteAPS
Beamline19-BM
Temperature [K]100
Detector technologyCCD
Collection date2018-10-13
DetectorADSC QUANTUM 210r
Wavelength(s)0.97933
Spacegroup nameP 62 2 2
Unit cell lengths116.502, 116.502, 74.702
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution38.134 - 2.000
R-factor0.1649
Rwork0.163
R-free0.20150
Structure solution methodSAD
RMSD bond length0.005
RMSD bond angle0.670
Data reduction softwareHKL-3000
Data scaling softwareHKL-3000
Phasing softwareHKL-3000
Refinement softwarePHENIX ((1.13_2998: ???))
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]50.0002.030
High resolution limit [Å]2.0002.000
Rmerge0.1010.880
Number of reflections207091000
<I/σ(I)>45.53.9
Completeness [%]99.598.6
Redundancy23.323.8
CC(1/2)0.895
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, SITTING DROP6.52890.05M Bis-Tris pH 6.5, 45%(v/v) PEG400

246031

PDB entries from 2025-12-10

PDB statisticsPDBj update infoContact PDBjnumon