6NEY
Crystal structure of TcBDF5, a bromodomain containing protein from Trypanosoma cruzi
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | APS BEAMLINE 19-ID |
Synchrotron site | APS |
Beamline | 19-ID |
Temperature [K] | 100 |
Detector technology | PIXEL |
Collection date | 2018-12-05 |
Detector | DECTRIS PILATUS3 6M |
Wavelength(s) | 0.97918 |
Spacegroup name | P 21 21 2 |
Unit cell lengths | 61.887, 70.428, 26.644 |
Unit cell angles | 90.00, 90.00, 90.00 |
Refinement procedure
Resolution | 46.490 - 1.680 |
R-factor | 0.22603 |
Rwork | 0.224 |
R-free | 0.26702 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 5tcm |
RMSD bond length | 0.007 |
RMSD bond angle | 1.502 |
Data reduction software | HKL-3000 |
Data scaling software | HKL-3000 |
Phasing software | PHASER (2.8.2) |
Refinement software | REFMAC (5.8.0238) |
Data quality characteristics
Overall | Inner shell | Outer shell | |
Low resolution limit [Å] | 50.000 | 50.000 | 1.710 |
High resolution limit [Å] | 1.680 | 4.560 | 1.680 |
Rmerge | 0.082 | 0.060 | 0.732 |
Rmeas | 0.087 | 0.065 | 0.789 |
Rpim | 0.030 | 0.024 | 0.283 |
Number of reflections | 13782 | 800 | 555 |
<I/σ(I)> | 6.6 | ||
Completeness [%] | 98.2 | 99.6 | 83.7 |
Redundancy | 7.8 | 7.5 | 6 |
CC(1/2) | 0.995 | 0.749 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, SITTING DROP | 7.5 | 292 | 1.8 M NH4SO4, 0.2 M Na Acetate and 0.1M Hepes pH7.5 |