6NEO
Crystal structure of PprA filament from Deinococcus radiodurans
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | ROTATING ANODE |
Source details | RIGAKU MICROMAX-007 HF |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2018-06-08 |
Detector | RIGAKU SATURN 944+ |
Wavelength(s) | 1.5418 |
Spacegroup name | P 64 2 2 |
Unit cell lengths | 148.979, 148.979, 79.250 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 50.032 - 5.940 |
R-factor | 0.2881 |
Rwork | 0.287 |
R-free | 0.30880 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 6MC8 chain B |
RMSD bond length | 0.001 |
RMSD bond angle | 0.357 |
Data reduction software | MOSFLM |
Data scaling software | Aimless (0.5.32) |
Phasing software | PHASER (1.13_2998) |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 67.530 | 6.640 |
High resolution limit [Å] | 5.940 | 5.940 |
Rmerge | 0.261 | |
Rmeas | 0.278 | |
Rpim | 0.074 | 0.565 |
Number of reflections | 1513 | 402 |
<I/σ(I)> | 9.5 | 1.4 |
Completeness [%] | 98.8 | 96.8 |
Redundancy | 13.9 | 13.8 |
CC(1/2) | 0.995 | 0.496 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION, HANGING DROP | 6.5 | 293.15 | 1:1 4.9 mg/mL protein in 150 mM potassium chloride, 20 mM Tris, pH 8.0 + Morpheus II-FX96 (Molecular Dimensions) condition H2 - 40 mM polyamines (spermine tetrahydrochloride, spermidine trihydrochloride, 1,4-diaminobutane dihydrochloride, DL-ornithine monohydrochloride), 50% v/v Precipitant Mix 6 (25% w/v PEG4000, 40% w/v 1,2,6-hexanetriol), 0.1 M Buffer System 4 (Gly-Gly, AMPD) at pH 6.5. The drop was suspended over a 1.5 M ammonium sulfate dehydrating solution and incubated at 20 degrees C for about 5 months. |