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6NEO

Crystal structure of PprA filament from Deinococcus radiodurans

Experimental procedure
Experimental methodSINGLE WAVELENGTH
Source typeROTATING ANODE
Source detailsRIGAKU MICROMAX-007 HF
Temperature [K]100
Detector technologyCCD
Collection date2018-06-08
DetectorRIGAKU SATURN 944+
Wavelength(s)1.5418
Spacegroup nameP 64 2 2
Unit cell lengths148.979, 148.979, 79.250
Unit cell angles90.00, 90.00, 120.00
Refinement procedure
Resolution50.032 - 5.940
R-factor0.2881
Rwork0.287
R-free0.30880
Structure solution methodMOLECULAR REPLACEMENT
Starting model (for MR)6MC8 chain B
RMSD bond length0.001
RMSD bond angle0.357
Data reduction softwareMOSFLM
Data scaling softwareAimless (0.5.32)
Phasing softwarePHASER (1.13_2998)
Refinement softwarePHENIX (1.13_2998)
Data quality characteristics
 OverallOuter shell
Low resolution limit [Å]67.5306.640
High resolution limit [Å]5.9405.940
Rmerge0.261
Rmeas0.278
Rpim0.0740.565
Number of reflections1513402
<I/σ(I)>9.51.4
Completeness [%]98.896.8
Redundancy13.913.8
CC(1/2)0.9950.496
Crystallization Conditions
crystal IDmethodpHtemperaturedetails
1VAPOR DIFFUSION, HANGING DROP6.5293.151:1 4.9 mg/mL protein in 150 mM potassium chloride, 20 mM Tris, pH 8.0 + Morpheus II-FX96 (Molecular Dimensions) condition H2 - 40 mM polyamines (spermine tetrahydrochloride, spermidine trihydrochloride, 1,4-diaminobutane dihydrochloride, DL-ornithine monohydrochloride), 50% v/v Precipitant Mix 6 (25% w/v PEG4000, 40% w/v 1,2,6-hexanetriol), 0.1 M Buffer System 4 (Gly-Gly, AMPD) at pH 6.5. The drop was suspended over a 1.5 M ammonium sulfate dehydrating solution and incubated at 20 degrees C for about 5 months.

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