6N5V
Crystal Structure of Strictosidine in complex with 1H-indole-4-ethanamine
Experimental procedure
Experimental method | SINGLE WAVELENGTH |
Source type | SYNCHROTRON |
Source details | SSRF BEAMLINE BL17U1 |
Synchrotron site | SSRF |
Beamline | BL17U1 |
Temperature [K] | 100 |
Detector technology | CCD |
Collection date | 2017-07-01 |
Detector | ADSC QUANTUM 210r |
Wavelength(s) | 0.979150 |
Spacegroup name | H 3 |
Unit cell lengths | 150.400, 150.400, 122.610 |
Unit cell angles | 90.00, 90.00, 120.00 |
Refinement procedure
Resolution | 37.600 - 2.549 |
R-factor | 0.2083 |
Rwork | 0.207 |
R-free | 0.24720 |
Structure solution method | MOLECULAR REPLACEMENT |
Starting model (for MR) | 2v91 |
RMSD bond length | 0.010 |
RMSD bond angle | 1.163 |
Data reduction software | XDS (VERSION Jan 26, 2018 BUILT=20180126) |
Data scaling software | XDS (VERSION Jan 26, 2018 BUILT=20180126) |
Phasing software | Auto-Rickshaw |
Refinement software | PHENIX (1.13_2998) |
Data quality characteristics
Overall | Outer shell | |
Low resolution limit [Å] | 37.600 | 2.700 |
High resolution limit [Å] | 2.549 | 2.550 |
Rmerge | 0.060 | 0.710 |
Rmeas | 0.064 | 0.839 |
Number of reflections | 64264 | 10128 |
<I/σ(I)> | 9.3 | 1.5 |
Completeness [%] | 95.2 | 93.4 |
Redundancy | 2.23 | 2.27 |
CC(1/2) | 0.996 | 0.906 |
Crystallization Conditions
crystal ID | method | pH | temperature | details |
1 | VAPOR DIFFUSION | 7.5 | 300 | 0.8 M potassium sodium tartrate tetrahydrate and 0.1 M HEPES, pH 7.4, 5 mg/mL strictosidine synthase, 3 mM 4-IEA (1H-indole-4-ethanamine) |